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Working with Workflow objects

Functions and classes for creating and working with Workflow objects

MeanModelWorkflow
MeanModelWorkflow
PopulationWorkflow
PopulationWorkflow
QualificationWorkflow
QualificationWorkflow
activateWorkflowTasks()
activateWorkflowTasks
addStudyParameters()
addStudyParameters
addXParametersForDemogrpahyPlot()
addXParametersForDemogrpahyPlot
addXParametersForPKParametersPlot() addXParametersForPkParametersPlot()
addXParametersForPKParametersPlot
addYParametersForDemogrpahyPlot()
addYParametersForDemogrpahyPlot
addYParametersForPKParametersPlot() addYParametersForPkParametersPlot()
addYParametersForPKParametersPlot
checkTaskInputsExist()
checkTaskInputsExist
getMeanSensitivityAnalysisResultsFileNames()
getMeanSensitivityAnalysisResultsFileNames
getOutputPathsInSimulationSet()
getOutputPathsInSimulationSet
getPKAnalysisResultsFileNames() getPkAnalysisResultsFileNames()
getPKAnalysisResultsFileNames
getPKParametersInOutput()
getPKParametersInOutput
getPKParametersInSimulationSet()
getPKParametersInSimulationSet
getPopulationSensitivityAnalysisResultsFileNames()
getPopulationSensitivityAnalysisResultsFileNames
getSimulationDescriptor()
getSimulationDescriptor
getSimulationParameterDisplayPaths()
getSimulationParameterDisplayPaths
getSimulationResultFileNames()
getSimulationResultFileNames
getTaskInputs()
getTaskInputs
getWorkflowParameterDisplayPaths()
getWorkflowParameterDisplayPaths
getXParametersForDemogrpahyPlot()
getXParametersForDemogrpahyPlot
getXParametersForPKParametersPlot() getXParametersForPkParametersPlot()
getXParametersForPKParametersPlot
getYParametersForDemogrpahyPlot()
getYParametersForDemogrpahyPlot
getYParametersForPKParametersPlot() getYParametersForPkParametersPlot()
getYParametersForPKParametersPlot
inactivateWorkflowTasks()
inactivateWorkflowTasks
setSimulationDescriptor()
setSimulationDescriptor
setWorkflowParameterDisplayPaths()
setWorkflowParameterDisplayPaths
setWorkflowParameterDisplayPathsFromFile()
setWorkflowParameterDisplayPathsFromFile
setXParametersForDemogrpahyPlot()
setXParametersForDemogrpahyPlot
setXParametersForPKParametersPlot() setXParametersForPkParametersPlot()
setXParametersForPKParametersPlot
setYParametersForDemogrpahyPlot()
setYParametersForDemogrpahyPlot
setYParametersForPKParametersPlot() setYParametersForPkParametersPlot()
setYParametersForPKParametersPlot

Simulation Sets and Outputs

Classes required for creating workflows

getOutputPathsInSimulationSet()
getOutputPathsInSimulationSet
getPKParametersInSimulationSet()
getPKParametersInSimulationSet
PopulationSimulationSet
PopulationSimulationSet
SimulationSet
SimulationSet
getPKParametersInOutput()
getPKParametersInOutput
Output
Output
PkParameterInfo
PkParameterInfo

Workflow tasks

Functions and classes for creating and working with workflow tasks

addUserDefinedTask()
addUserDefinedTask
GofPlotTask
GofPlotTask
loadCalculatePKParametersTask()
loadCalculatePKParametersTask
loadCalculateSensitivityTask()
loadCalculateSensitivityTask
loadGOFMergedTask()
loadGOFMergedTask
loadPlotAbsorptionTask()
loadPlotAbsorptionTask
loadPlotDDIRatioTask()
loadPlotDDIRatioTask
loadPlotDemographyTask()
loadPlotDemographyTask
loadPlotMassBalanceTask()
loadPlotMassBalanceTask
loadPlotPKParametersTask()
loadPlotPKParametersTask
loadPlotPKRatioTask()
loadPlotPKRatioTask
loadPlotSensitivityTask()
loadPlotSensitivityTask
loadPlotTimeProfilesAndResidualsTask()
loadPlotTimeProfilesAndResidualsTask
loadQualificationComparisonTimeProfileTask()
loadQualificationComparisonTimeProfileTask
loadQualificationTimeProfilesTask()
loadPlotTimeProfilesTask
loadSimulateTask()
loadSimulateTask
PlotTask
PlotTask
PopulationPlotTask
PopulationPlotTask
PopulationSensitivityAnalysisTask
PopulationSensitivityAnalysisTask
QualificationTask
QualificationTask
SensitivityAnalysisTask
SensitivityAnalysisTask
Task
Task

Qualification Workflows

Functions and classes dedicated to Qualification Workflows

adjustTitlePage()
adjustTitlePage
ConfigurationPlan
ConfigurationPlan
loadConfigurationPlan()
loadConfigurationPlan
loadQualificationWorkflow()
loadQualificationWorkflow
startQualificationRunner()
startQualificationRunner

Writing and formatting reports

Functions for facilitating the writing and formatting of markdown and word reports

addFigureChunk()
addFigureChunk
addTableChunk()
addTableChunk
addTextChunk()
addTextChunk
anchor()
anchor
copyReport()
copyReport
getAnchorName()
getAnchorName
hasAnchor()
hasAnchor
mergeMarkdownFiles()
mergeMarkdownFiles
renderReport()
renderReport
renderWordReport()
renderWordReport
resetReport()
resetReport

Enum Helpers

Enums listing available values for specific properties

AllAvailableTasks
AllAvailableTasks
ApplicationRanges
ApplicationRanges
DataSelectionKeys
DataSelectionKeys
PopulationWorkflowTypes
PopulationWorkflowTypes
ResidualScales
ResidualScales
StandardPlotTasks
StandardPlotTasks
StandardSimulationTasks
StandardSimulationTasks

Default Settings

Functions for defining default package or workflow settings.

setDefaultAutoAxisLimitMargin()
setDefaultAutoAxisLimitMargin
setDefaultBins()
setDefaultBins
setDefaultNumericFormat()
setDefaultNumericFormat
setDefaultPlotFormat()
setDefaultPlotFormat
setDefaultStairstep()
setDefaultStairstep
setDefaultTheme()
setDefaultTheme
setDefaultThemeFromJson()
setDefaultThemeFromJson
setWatermarkConfiguration()
setWatermarkConfiguration
getDefaultDemographyXParameters()
getDefaultDemographyXParameters
getDefaultPKParametersXParameters() getDefaultPkParametersXParameters()
getDefaultPKParametersXParameters

Simulated and observed data helpers

Helper functions for working with simulated and observed data.

calculateArithmeticErrorRange()
calculateArithmeticErrorRange
calculateGeometricErrorRange()
calculateGeometricErrorRange
calculateGMFE()
calculateGMFE
calculateResiduals()
calculateResiduals
getResiduals()
getResiduals
isBetween()
isBetween
measureValuesBetween()
measureValuesBetween
readObservedDataFile()
readObservedDataFile
lastPathElement()
lastPathElement
evalDataFilter()
evalDataFilter
loadSimulationWithUpdatedPaths()
loadSimulationWithUpdatedPaths
loadWorkflowPopulation()
loadWorkflowPopulation