Retrieve all molecules of a container (simulation or container instance) matching the given path criteria

Retrieve all molecules of a container (simulation or container instance) matching the given path criteria

Usage

getAllMoleculesMatching(paths, container)

Arguments

paths

A vector of strings representing the paths relative to the container

container

A Container or Simulation used to find the molecules

Value

A list of molecules matching the path criteria. The list is empty if no molecules matching were found.

See also

loadSimulation(), getContainer() and getAllContainersMatching() to retrieve objects of type Container or Simulation

Examples

simPath <- system.file("extdata", "simple.pkml", package = "ospsuite")
sim <- loadSimulation(simPath)

# Return all `A` molecules defined in all direct containers of the organism
molecules <- getAllMoleculesMatching("Organism|*|A", sim)

# Return all `A` molecules defined in all direct containers of the organism
# and the molecule `B`` of the container 'Liver'
paths <- c("Organism|*|A", "Organism|Liver|B")
molecules <- getAllMoleculesMatching(paths, sim)

# Returns all `A` molecules defined in `Organism` and all its subcontainers
molecules <- getAllMoleculesMatching("Organism|**|A", sim)