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Extend an Initial Conditions Building Block (BB) with new entries for molecules from a molecules BB in all physical containers of a spatial structure BB.

Source: R/utilities-building-block.R
extendInitialConditionsBB.Rd

If an initial condition for the combination <container, molecule> already exists in the IC-BB, the value will be kept AS IS.

Usage

extendInitialConditionsBB(
  initialConditionsBuildingBlock,
  spatialStructureModule,
  moleculesModule,
  moleculeNames = NULL
)

Arguments

initialConditionsBuildingBlock

A BuildingBlock object of type Initial Conditions.

spatialStructureModule

A module with a spatial structure building block. Entries will be created for the selected molecules in all physical containers of the spatial structure.

moleculesModule

A module with a molecules building block. The entries will be created for all molecules from this building block, or for a subset of molecules defined in the moleculeNames argument.

moleculeNames

Optional list of molecule names. If provided, only the molecules with these names will be added to the initialConditionsBuildingBlock. If a specified molecule is not present in the provided molecules BB, it will be ignored.

Value

Paths of entries added to the building block.