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Create a simulation configuration from modules.

Source: R/utilities-simulation-configuration.R
createSimulationConfiguration.Rd

2DO

Usage

createSimulationConfiguration(
  modules,
  individual = NULL,
  expressionProfiles = NULL,
  initialConditions = NULL,
  parameterValues = NULL
)

Arguments

modules

A list of Module objects from which to create in simulation. The order of modules defines the order in which the modules will be combined to a simulation!

individual

Optional, an individual building block

expressionProfiles

Optional, a list of expression profiles to apply to the simulation.

initialConditions

By default, the first Initial Conditions (IC) building block (BB) of each module will be selected. If a module has multiple IC BBs, it is possible to specify which IC BB to apply by providing a named list, where the name should be the name of the module and the value the name of the IC BB. By setting the value to NULL, no IC BB from the specified module will be applied.

parameterValues

By default, the first Parameter Values (PV) building block (BB) of each module will be selected. If a module has multiple PV BBs, it is possible to specify which PV BB to apply by providing a named list, where the name should be the name of the module and the value the name of the PV BB. By setting the value to NULL, no PV BB from the specified module will be applied.

Value

A SimulationConfiguration object.