Get a data.frame of projects, simulations and outputs
getSimulationsOutputsFromProjects(projectData)A data.frame with columns `Project`, `Simulation` and `Output`
# Get the project data from a list of paths
snapshotPaths <- list(
"Raltegravir" = file.path(
"https://raw.githubusercontent.com",
"Open-Systems-Pharmacology",
"Raltegravir-Model",
"v1.2",
"Raltegravir-Model.json"
),
"Atazanavir" = file.path(
"https://raw.githubusercontent.com",
"Open-Systems-Pharmacology",
"Atazanavir-Model",
"v1.2",
"Atazanavir-Model.json"
)
)
projectData <- getProjectsFromList(snapshotPaths)
# Get the simulations outputs from the projects
getSimulationsOutputsFromProjects(projectData)
#> Project Simulation
#> 1 Raltegravir Raltegravir 800 mg (lactose formulation)
#> 2 Raltegravir Raltegravir 10 mg (lactose formulation)
#> 3 Raltegravir Raltegravir 100 mg (lactose formulation)
#> 4 Raltegravir Raltegravir 1200 mg (lactose formulation)
#> 5 Raltegravir Raltegravir 1600 mg (lactose formulation)
#> 6 Raltegravir Raltegravir 200 mg (lactose formulation)
#> 7 Raltegravir Raltegravir 25 mg (lactose formulation)
#> 8 Raltegravir Raltegravir 50 mg (lactose formulation)
#> 9 Raltegravir Raltegravir 400mg chewable fasted
#> 10 Raltegravir Raltegravir 400mg filmcoated tablet
#> 11 Raltegravir Raltegravir 400mg (lactose formulation)
#> 12 Raltegravir Raltegravir 100 mg filmcoated tablet md
#> 13 Raltegravir Raltegravir 200 mg filmcoated tablet md
#> 14 Raltegravir Raltegravir 400 mg filmcoated tablet md
#> 15 Raltegravir Raltegravir 400mg (granules in suspension)
#> 16 Raltegravir Raltegravir 400mg chewable fed
#> 17 Atazanavir Acosta2007_300mg
#> 18 Atazanavir Agarwala2003_400mg
#> 19 Atazanavir Agarwala2005a_400mg
#> 20 Atazanavir Agarwala2005b_400mg
#> 21 Atazanavir Martin2008_400mg
#> 22 Atazanavir Zhu2011_400mg
#> 23 Atazanavir FDA-ClinPharmReview_AI424-014_400mg_YoungFemales
#> 24 Atazanavir FDA-ClinPharmReview_AI424-028_200mg
#> 25 Atazanavir FDA-ClinPharmReview_AI424-028_400mg
#> 26 Atazanavir FDA-ClinPharmReview_AI424-040_200mg
#> 27 Atazanavir FDA-ClinPharmReview_AI424-040_400mg
#> 28 Atazanavir FDA-ClinPharmReview_AI424-040_800mg
#> 29 Atazanavir FDA-ClinPharmReview_AI424-056_300mg
#> 30 Atazanavir FDA-ClinPharmReview_AI424-076_400mg
#> 31 Atazanavir FDA-ClinPharmReview_AI424-076_800mg
#> 32 Atazanavir Zhu2010_300mg_Atazanavir
#> 33 Atazanavir FDA-ClinPharmReview_AI424-004_400mg_TreatmentA
#> 34 Atazanavir FDA-ClinPharmReview_AI424-014_400mg_YoungMales
#> 35 Atazanavir FDA-ClinPharmReview_AI424-014_400mg_YoungMales
#> 36 Atazanavir FDA-ClinPharmReview_AI424-015_400mg_NormalSubjects
#> Output
#> 1 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 2 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 3 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 4 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 5 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 6 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 7 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 8 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 9 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 10 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 11 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 12 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 13 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 14 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 15 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 16 Organism|PeripheralVenousBlood|Raltegravir|Plasma (Peripheral Venous Blood)
#> 17 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 18 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 19 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 20 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 21 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 22 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 23 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 24 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 25 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 26 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 27 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 28 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 29 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 30 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 31 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 32 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 33 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 34 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)
#> 35 Organism|Kidney|Urine|Atazanavir|Fraction excreted to urine
#> 36 Organism|PeripheralVenousBlood|Atazanavir|Plasma (Peripheral Venous Blood)